Things Done and Things Undone !

Implemented denotes what is already implemented in phyloGeoRef.
TODO: demotes that things that are must to be done.
Planned: Denotes a change in implementation or adding additional features.

1. TREE FORMATs (Files containing the tree data)
   
   Implemented: newick (.nwk) , nexml (.xml) , phyloxml (.xml) , nexus (.nex), (.tolxml)
   
   
   
2. METADATA FORMATs (Files which contain the spatial data)
   
   Implemented: csv, txt
   
   
3. NODE POSITIONING
   
   Implemented: Simple Mean
   Planned: Weighted Mean for trees with edge lengths
   Bug: Incorrect positioning algorithm. Modify it and make it efficient.
   
   
4. TUTORIAL
   Posted: https://github.com/dapurv5/phyloGeoRef/wiki/Tutorial:-Using-the-GrandUnifiedReader,-adding-new-properties.
   Planned: Tutorial on writing the main class. (1/2 day)
   
   
5. ERROR CHECKING:
   Implemented: Error checking for implausible lat/long
   Implemented: Error due to absence of information given in the tree but not in the metadata file.
   Planned: Checking corner cases like when all the child nodes of a parent node have missing locations.
   Planned: Checking clade consistency.
   
   
6. WRITING KML
   Implemented: Display of tip nodes on the map and the skeletal structure of the tree.
   Implemented: Levelwise slicing of the tree in folders.
   Planned: Hierarchical slicing of the tree into folders.
   TODO: HTML balloons associated with each node.
   Planned: Associating regions with HTUs also.
   Planned: Animation.
   Planned: Compressing the kml file as kmz
   
   
7. EXTRA DATA
   Planned: Taking images and other rich data from external web services.
   Planned: Preparing a local cache for this data since downloading data for thousands of species on each run of the program would be a time wasting process.
   Planned: Writing a command line option parser for the main class.