Tuesday, June 28, 2011


The nescent.phylogeoref.reader package is now almost over. Here is an overview of what's into it.

Basically there are two kind of readers in here. "TreeReader" and "MetadataReader" for reading trees and metadata respectively.

Here is the class hierarchy


  1. MultiFormatReader
  2. UniversalTreeReader
  3. NeXMLReader

  1. CSVMetadataReader
  2. TextMetadataReader
  3. UniversalMetadataReader

I have given a tutorial on using the GrandUnifiedReader on github wiki.
Understanding the PhylogenyKitchen class may be a bit tricky because I myself would have to go through it again to explain you, however using it very easy. Further I have included sufficient comments to make it clear.


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